IL_5MC6_058

3D structure

PDB id

5MC6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a native ribosome-Ski2-Ski3-Ski8 complex from S. cerevisiae

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GUC*GUU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5MC6_058 not in the Motif Atlas

Geometric match to IL_3FOZ_001

Geometric discrepancy: 0.1623

The information below is about IL_3FOZ_001

Detailed Annotation

Isolated cWH basepair

Broad Annotation

Isolated cWH basepair

Motif group

IL_70707.3

Basepair signature

cWW-cHW-cWW

Number of instances in this motif group

70

Unit IDs

5MC6|1|2|G|1213
5MC6|1|2|U|1214
5MC6|1|2|C|1215
*
5MC6|1|2|G|1448
5MC6|1|2|U|1449
5MC6|1|2|U|1450

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain C

40S ribosomal protein S10-A

Chain E

40S ribosomal protein S15

Chain M

40S ribosomal protein S29-A