IL_5MC6_065
3D structure
- PDB id
- 5MC6 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of a native ribosome-Ski2-Ski3-Ski8 complex from S. cerevisiae
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.8 Å
Loop
- Sequence
- CG*CAG
- Length
- 5 nucleotides
- Bulged bases
- 5MC6|1|2|A|1427
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5MC6_065 not in the Motif Atlas
- Homologous match to IL_4V88_452
- Geometric discrepancy: 0.1929
- The information below is about IL_4V88_452
- Detailed Annotation
- Single bulged A
- Broad Annotation
- No text annotation
- Motif group
- IL_31462.1
- Basepair signature
- cWW-L-cWW
- Number of instances in this motif group
- 127
Unit IDs
5MC6|1|2|C|1280
5MC6|1|2|G|1281
*
5MC6|1|2|C|1426
5MC6|1|2|A|1427
5MC6|1|2|G|1428
Current chains
- Chain 2
- 18S ribosomal RNA
Nearby chains
- Chain A
- 40S ribosomal protein S3
- Chain F
- 40S ribosomal protein S16-A
- Chain J
- 40S ribosomal protein S20
- Chain M
- 40S ribosomal protein S29-A
- Chain R
- 40S ribosomal protein S2
- Chain l
- mRNA
- Chain m
- Transfer RNA; tRNA
Coloring options: