IL_5MC6_099

3D structure

PDB id

5MC6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a native ribosome-Ski2-Ski3-Ski8 complex from S. cerevisiae

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

UUUG*UAUA

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5MC6_099 not in the Motif Atlas

Geometric match to IL_4K27_001

Geometric discrepancy: 0.332

The information below is about IL_4K27_001

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_15225.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

39

Unit IDs

5MC6|1|BQ|U|429
5MC6|1|BQ|U|430
5MC6|1|BQ|U|431
5MC6|1|BQ|G|432
*
5MC6|1|BQ|U|627
5MC6|1|BQ|A|628
5MC6|1|BQ|U|629
5MC6|1|BQ|A|630

Current chains

Chain BQ

25S ribosomal RNA

Nearby chains

Chain AU

60S ribosomal protein L16-A

Chain BG

60S ribosomal protein L32

Chain BK

60S ribosomal protein L33-A

Chain BS

5.8S ribosomal RNA; 5.8S rRNA