IL_5MC6_106
3D structure
- PDB id
- 5MC6 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of a native ribosome-Ski2-Ski3-Ski8 complex from S. cerevisiae
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.8 Å
Loop
- Sequence
- GGGGC*GUGCAC
- Length
- 11 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5MC6_106 not in the Motif Atlas
- Geometric match to IL_4V9F_018
- Geometric discrepancy: 0.2622
- The information below is about IL_4V9F_018
- Detailed Annotation
- Triple sheared related
- Broad Annotation
- Triple sheared
- Motif group
- IL_67427.1
- Basepair signature
- cWW-cWW-L-R-L-R-cWW-cWW
- Number of instances in this motif group
- 2
Unit IDs
5MC6|1|BQ|G|725
5MC6|1|BQ|G|726
5MC6|1|BQ|G|727
5MC6|1|BQ|G|728
5MC6|1|BQ|C|729
*
5MC6|1|BQ|G|740
5MC6|1|BQ|U|741
5MC6|1|BQ|G|742
5MC6|1|BQ|C|743
5MC6|1|BQ|A|744
5MC6|1|BQ|C|745
Current chains
- Chain BQ
- 25S ribosomal RNA
Nearby chains
- Chain AV
- 60S ribosomal protein L29
- Chain BB
- 60S ribosomal protein L18-A
Coloring options: