IL_5MC6_124

3D structure

PDB id

5MC6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a native ribosome-Ski2-Ski3-Ski8 complex from S. cerevisiae

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GAUUA*UUCUC

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5MC6_124 not in the Motif Atlas

Geometric match to IL_4V88_422

Geometric discrepancy: 0.3861

The information below is about IL_4V88_422

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_05145.3

Basepair signature

cWW-cWW-cWW-cWW-cWW

Number of instances in this motif group

13

Unit IDs

5MC6|1|BQ|G|1005
5MC6|1|BQ|A|1006
5MC6|1|BQ|U|1007
5MC6|1|BQ|U|1008
5MC6|1|BQ|A|1009
*
5MC6|1|BQ|U|1041
5MC6|1|BQ|U|1042
5MC6|1|BQ|C|1043
5MC6|1|BQ|U|1044
5MC6|1|BQ|C|1045

Current chains

Chain BQ

25S ribosomal RNA

Nearby chains

Chain BD

60S ribosomal protein L10

Chain BI

60S ribosomal protein L5