IL_5MC6_133
3D structure
- PDB id
- 5MC6 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of a native ribosome-Ski2-Ski3-Ski8 complex from S. cerevisiae
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.8 Å
Loop
- Sequence
- CUCAUCAG*CUCAAG
- Length
- 14 nucleotides
- Bulged bases
- 5MC6|1|BQ|U|1191, 5MC6|1|BQ|C|1192, 5MC6|1|BQ|C|1316, 5MC6|1|BQ|A|1318
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
5MC6|1|BQ|C|1187
5MC6|1|BQ|U|1188
5MC6|1|BQ|C|1189
5MC6|1|BQ|A|1190
5MC6|1|BQ|U|1191
5MC6|1|BQ|C|1192
5MC6|1|BQ|A|1193
5MC6|1|BQ|G|1194
*
5MC6|1|BQ|C|1314
5MC6|1|BQ|U|1315
5MC6|1|BQ|C|1316
5MC6|1|BQ|A|1317
5MC6|1|BQ|A|1318
5MC6|1|BQ|G|1319
Current chains
- Chain BQ
- 25S ribosomal RNA
Nearby chains
- Chain AD
- 60S ribosomal protein L9-A
- Chain AM
- 60S ribosomal protein L14-A
- Chain AO
- Ubiquitin-60S ribosomal protein L40
- Chain AU
- 60S ribosomal protein L16-A
- Chain BH
- 60S ribosomal protein L20-A
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