IL_5MC6_144
3D structure
- PDB id
- 5MC6 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of a native ribosome-Ski2-Ski3-Ski8 complex from S. cerevisiae
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.8 Å
Loop
- Sequence
- GGCC*GCC
- Length
- 7 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5MC6_144 not in the Motif Atlas
- Geometric match to IL_4N0T_004
- Geometric discrepancy: 0.3642
- The information below is about IL_4N0T_004
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_32983.2
- Basepair signature
- cWW-L-R-L-cWW
- Number of instances in this motif group
- 8
Unit IDs
5MC6|1|BQ|G|1560
5MC6|1|BQ|G|1561
5MC6|1|BQ|C|1562
5MC6|1|BQ|C|1563
*
5MC6|1|BQ|G|1577
5MC6|1|BQ|C|1578
5MC6|1|BQ|C|1579
Current chains
- Chain BQ
- 25S ribosomal RNA
Nearby chains
- Chain AA
- 60S ribosomal protein L8-A
- Chain AH
- 60S ribosomal protein L25
- Chain AW
- 60S ribosomal protein L2-A
- Chain BS
- 5.8S ribosomal RNA; 5.8S rRNA
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