IL_5MC6_148

3D structure

PDB id

5MC6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a native ribosome-Ski2-Ski3-Ski8 complex from S. cerevisiae

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

UCUUC*GGAAUA

Length

11 nucleotides

Bulged bases

5MC6|1|BQ|U|1629, 5MC6|1|BQ|U|1815

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5MC6_148 not in the Motif Atlas

Geometric match to IL_5TBW_066

Geometric discrepancy: 0.3374

The information below is about IL_5TBW_066

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_48431.1

Basepair signature

cWW-L-R-L-R-L-cWW

Number of instances in this motif group

2

Unit IDs

5MC6|1|BQ|U|1627
5MC6|1|BQ|C|1628
5MC6|1|BQ|U|1629
5MC6|1|BQ|U|1630
5MC6|1|BQ|C|1631
*
5MC6|1|BQ|G|1811
5MC6|1|BQ|G|1812
5MC6|1|BQ|A|1813
5MC6|1|BQ|A|1814
5MC6|1|BQ|U|1815
5MC6|1|BQ|A|1816

Current chains

Chain BQ

25S ribosomal RNA

Nearby chains

Chain AN

60S ribosomal protein L27-A