IL_5MC6_153

3D structure

PDB id

5MC6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a native ribosome-Ski2-Ski3-Ski8 complex from S. cerevisiae

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

UUAAC*GGAAGA

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5MC6_153 not in the Motif Atlas

Homologous match to IL_8C3A_077

Geometric discrepancy: 0.1121

The information below is about IL_8C3A_077

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_69313.1

Basepair signature

cWW-tWH-tHH-tHS-cWW

Number of instances in this motif group

2

Unit IDs

5MC6|1|BQ|U|1694
5MC6|1|BQ|U|1695
5MC6|1|BQ|A|1696
5MC6|1|BQ|A|1697
5MC6|1|BQ|C|1698
*
5MC6|1|BQ|G|1747
5MC6|1|BQ|G|1748
5MC6|1|BQ|A|1749
5MC6|1|BQ|A|1750
5MC6|1|BQ|G|1751
5MC6|1|BQ|A|1752

Current chains

Chain BQ

25S ribosomal RNA

Nearby chains

Chain AI

60S ribosomal protein L38

Chain BN

60S ribosomal protein L34-A