IL_5MC6_154

3D structure

PDB id

5MC6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a native ribosome-Ski2-Ski3-Ski8 complex from S. cerevisiae

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

UUAUCA*UCUUAUG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5MC6_154 not in the Motif Atlas

Homologous match to IL_5TBW_072

Geometric discrepancy: 0.157

The information below is about IL_5TBW_072

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_39753.2

Basepair signature

cWW-L-R-tWH-L-R-L-R-L-cWW

Number of instances in this motif group

2

Unit IDs

5MC6|1|BQ|U|1702
5MC6|1|BQ|U|1703
5MC6|1|BQ|A|1704
5MC6|1|BQ|U|1705
5MC6|1|BQ|C|1706
5MC6|1|BQ|A|1707
*
5MC6|1|BQ|U|1737
5MC6|1|BQ|C|1738
5MC6|1|BQ|U|1739
5MC6|1|BQ|U|1740
5MC6|1|BQ|A|1741
5MC6|1|BQ|U|1742
5MC6|1|BQ|G|1743

Current chains

Chain BQ

25S ribosomal RNA

Nearby chains

Chain AT

60S ribosomal protein L43-A

Chain BN

60S ribosomal protein L34-A