IL_5MC6_159

3D structure

PDB id

5MC6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a native ribosome-Ski2-Ski3-Ski8 complex from S. cerevisiae

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

AGUCGG*CUGU

Length

10 nucleotides

Bulged bases

5MC6|1|BQ|G|2335

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5MC6_159 not in the Motif Atlas

Homologous match to IL_8C3A_083

Geometric discrepancy: 0.2213

The information below is about IL_8C3A_083

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_06455.1

Basepair signature

cWW-L-R-L-cWW-L-L

Number of instances in this motif group

7

Unit IDs

5MC6|1|BQ|A|1901
5MC6|1|BQ|G|1902
5MC6|1|BQ|U|1903
5MC6|1|BQ|C|1904
5MC6|1|BQ|G|1905
5MC6|1|BQ|G|1906
*
5MC6|1|BQ|C|2333
5MC6|1|BQ|U|2334
5MC6|1|BQ|G|2335
5MC6|1|BQ|U|2336

Current chains

Chain BQ

25S ribosomal RNA

Nearby chains

Chain AB

60S ribosomal protein L23-A

Chain BA

60S ribosomal protein L3