IL_5MC6_160

3D structure

PDB id

5MC6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a native ribosome-Ski2-Ski3-Ski8 complex from S. cerevisiae

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CGUAAC*GGAUAAG

Length

13 nucleotides

Bulged bases

5MC6|1|BQ|U|1931

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5MC6_160 not in the Motif Atlas

Geometric match to IL_4V9F_063

Geometric discrepancy: 0.1186

The information below is about IL_4V9F_063

Detailed Annotation

tSH-tSH-tHH-tHS

Broad Annotation

No text annotation

Motif group

IL_20700.1

Basepair signature

cWW-tSH-L-R-tHH-tHS-cWW

Number of instances in this motif group

10

Unit IDs

5MC6|1|BQ|C|1918
5MC6|1|BQ|G|1919
5MC6|1|BQ|U|1920
5MC6|1|BQ|A|1921
5MC6|1|BQ|A|1922
5MC6|1|BQ|C|1923
*
5MC6|1|BQ|G|1928
5MC6|1|BQ|G|1929
5MC6|1|BQ|A|1930
5MC6|1|BQ|U|1931
5MC6|1|BQ|A|1932
5MC6|1|BQ|A|1933
5MC6|1|BQ|G|1934

Current chains

Chain BQ

25S ribosomal RNA

Nearby chains

Chain 2

Small subunit ribosomal RNA; SSU rRNA

Chain AS

60S ribosomal protein L41-A

Chain AT

60S ribosomal protein L43-A