IL_5MC6_164

3D structure

PDB id

5MC6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a native ribosome-Ski2-Ski3-Ski8 complex from S. cerevisiae

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CGAUGG*UGUUGACG

Length

14 nucleotides

Bulged bases

5MC6|1|BQ|U|2159, 5MC6|1|BQ|U|2175, 5MC6|1|BQ|C|2179

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5MC6_164 not in the Motif Atlas

Homologous match to IL_5TBW_083

Geometric discrepancy: 0.11

The information below is about IL_5TBW_083

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_64509.1

Basepair signature

cWW-tWW-tWW-tSS-L-cWW

Number of instances in this motif group

2

Unit IDs

5MC6|1|BQ|C|2156
5MC6|1|BQ|G|2157
5MC6|1|BQ|A|2158
5MC6|1|BQ|U|2159
5MC6|1|BQ|G|2160
5MC6|1|BQ|G|2161
*
5MC6|1|BQ|U|2173
5MC6|1|BQ|G|2174
5MC6|1|BQ|U|2175
5MC6|1|BQ|U|2176
5MC6|1|BQ|G|2177
5MC6|1|BQ|A|2178
5MC6|1|BQ|C|2179
5MC6|1|BQ|G|2180

Current chains

Chain BQ

25S ribosomal RNA

Nearby chains

Chain AT

60S ribosomal protein L43-A

Chain AW

60S ribosomal protein L2-A