IL_5MC6_168

3D structure

PDB id

5MC6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a native ribosome-Ski2-Ski3-Ski8 complex from S. cerevisiae

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GAAUG*CGC

Length

8 nucleotides

Bulged bases

5MC6|1|BQ|U|2209

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5MC6_168 not in the Motif Atlas

Homologous match to IL_5TBW_087

Geometric discrepancy: 0.3184

The information below is about IL_5TBW_087

Detailed Annotation

Major groove platform with extra pair

Broad Annotation

Major groove platform

Motif group

IL_63450.5

Basepair signature

cWW-cHS-cWW-cWW-cWW

Number of instances in this motif group

7

Unit IDs

5MC6|1|BQ|G|2206
5MC6|1|BQ|A|2207
5MC6|1|BQ|A|2208
5MC6|1|BQ|U|2209
5MC6|1|BQ|G|2210
*
5MC6|1|BQ|C|2235
5MC6|1|BQ|G|2236
5MC6|1|BQ|C|2237

Current chains

Chain BQ

25S ribosomal RNA

Nearby chains

Chain 2

Small subunit ribosomal RNA; SSU rRNA

Chain AZ

uL1

Chain BT

Eukaryotic translation initiation factor 5A-1