IL_5MC6_171

3D structure

PDB id

5MC6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a native ribosome-Ski2-Ski3-Ski8 complex from S. cerevisiae

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CCAAAUGCCUCG*CGCG

Length

16 nucleotides

Bulged bases

5MC6|1|BQ|A|2281, 5MC6|1|BQ|C|2287, 5MC6|1|BQ|C|2306

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5MC6_171 not in the Motif Atlas

Geometric match to IL_5TBW_090

Geometric discrepancy: 0.1055

The information below is about IL_5TBW_090

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_66080.1

Basepair signature

cWW-cWW-tSH-L-cWW-L

Number of instances in this motif group

5

Unit IDs

5MC6|1|BQ|C|2277
5MC6|1|BQ|C|2278
5MC6|1|BQ|A|2279
5MC6|1|BQ|A|2280
5MC6|1|BQ|A|2281
5MC6|1|BQ|U|2282
5MC6|1|BQ|G|2283
5MC6|1|BQ|C|2284
5MC6|1|BQ|C|2285
5MC6|1|BQ|U|2286
5MC6|1|BQ|C|2287
5MC6|1|BQ|G|2288
*
5MC6|1|BQ|C|2304
5MC6|1|BQ|G|2305
5MC6|1|BQ|C|2306
5MC6|1|BQ|G|2307

Current chains

Chain BQ

25S ribosomal RNA

Nearby chains

Chain 2

Small subunit ribosomal RNA; SSU rRNA

Chain AS

60S ribosomal protein L41-A

Chain m

Transfer RNA; tRNA