IL_5MC6_198

3D structure

PDB id

5MC6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a native ribosome-Ski2-Ski3-Ski8 complex from S. cerevisiae

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

UUUUUG*CGAAG

Length

11 nucleotides

Bulged bases

5MC6|1|BQ|U|3056, 5MC6|1|BQ|U|3058

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5MC6_198 not in the Motif Atlas

Homologous match to IL_5TBW_118

Geometric discrepancy: 0.1611

The information below is about IL_5TBW_118

Detailed Annotation

UAA/GAN related

Broad Annotation

UAA/GAN related

Motif group

IL_17136.4

Basepair signature

cWW-R-L-tHS-tHW-cWW

Number of instances in this motif group

18

Unit IDs

5MC6|1|BQ|U|3054
5MC6|1|BQ|U|3055
5MC6|1|BQ|U|3056
5MC6|1|BQ|U|3057
5MC6|1|BQ|U|3058
5MC6|1|BQ|G|3059
*
5MC6|1|BQ|C|3084
5MC6|1|BQ|G|3085
5MC6|1|BQ|A|3086
5MC6|1|BQ|A|3087
5MC6|1|BQ|G|3088

Current chains

Chain BQ

25S ribosomal RNA

Nearby chains

Chain AE

60S ribosomal protein L24-A

Chain BA

60S ribosomal protein L3

Chain BC

60S ribosomal protein L31-A