IL_5MC6_200

3D structure

PDB id

5MC6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a native ribosome-Ski2-Ski3-Ski8 complex from S. cerevisiae

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

AUUAU*AGAAU

Length

10 nucleotides

Bulged bases

5MC6|1|BQ|A|3130

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5MC6_200 not in the Motif Atlas

Homologous match to IL_8C3A_129

Geometric discrepancy: 0.099

The information below is about IL_8C3A_129

Detailed Annotation

UAA/GAN

Broad Annotation

No text annotation

Motif group

IL_89002.4

Basepair signature

cWW-tWH-cWW-L-cWW-tHS

Number of instances in this motif group

15

Unit IDs

5MC6|1|BQ|A|3103
5MC6|1|BQ|U|3104
5MC6|1|BQ|U|3105
5MC6|1|BQ|A|3106
5MC6|1|BQ|U|3107
*
5MC6|1|BQ|A|3127
5MC6|1|BQ|G|3128
5MC6|1|BQ|A|3129
5MC6|1|BQ|A|3130
5MC6|1|BQ|U|3131

Current chains

Chain BQ

25S ribosomal RNA

Nearby chains

Chain AD

60S ribosomal protein L9-A

Chain AO

Ubiquitin-60S ribosomal protein L40

Chain AU

60S ribosomal protein L16-A