IL_5MC6_249

3D structure

PDB id

5MC6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a native ribosome-Ski2-Ski3-Ski8 complex from S. cerevisiae

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

UCAAC*GGA

Length

8 nucleotides

Bulged bases

5MC6|1|BQ|G|1514

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5MC6_249 not in the Motif Atlas

Homologous match to IL_8P9A_290

Geometric discrepancy: 0.1333

The information below is about IL_8P9A_290

Detailed Annotation

C-loop

Broad Annotation

No text annotation

Motif group

IL_63596.12

Basepair signature

cWW-cWS-cSH-tWH-cWW-L

Number of instances in this motif group

22

Unit IDs

5MC6|1|BQ|U|1501
5MC6|1|BQ|C|1502
5MC6|1|BQ|A|1503
5MC6|1|BQ|A|1504
5MC6|1|BQ|C|1505
*
5MC6|1|BQ|G|1513
5MC6|1|BQ|G|1514
5MC6|1|BQ|A|1515

Current chains

Chain BQ

25S ribosomal RNA

Nearby chains

Chain AL

60S ribosomal protein L39

Chain AX

60S ribosomal protein L17-A

Chain BF

60S ribosomal protein L19-A