IL_5MC6_253
3D structure
- PDB id
- 5MC6 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of a native ribosome-Ski2-Ski3-Ski8 complex from S. cerevisiae
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.8 Å
Loop
- Sequence
- AGCCAGCGA*UUGUGAAACU
- Length
- 19 nucleotides
- Bulged bases
- 5MC6|1|2|C|1482
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5MC6_253 not in the Motif Atlas
- Homologous match to IL_8CRE_462
- Geometric discrepancy: 0.5555
- The information below is about IL_8CRE_462
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_91698.1
- Basepair signature
- cWW-tWW-L-R-L-R-L-R-L-tHW-R-L-cWW
- Number of instances in this motif group
- 2
Unit IDs
5MC6|1|2|A|1479
5MC6|1|2|G|1480
5MC6|1|2|C|1481
5MC6|1|2|C|1482
5MC6|1|2|A|1483
5MC6|1|2|G|1484
5MC6|1|2|C|1485
5MC6|1|2|G|1486
5MC6|1|2|A|1487
*
5MC6|1|2|U|1519
5MC6|1|2|U|1520
5MC6|1|2|G|1521
5MC6|1|2|U|1522
5MC6|1|2|G|1523
5MC6|1|2|A|1524
5MC6|1|2|A|1525
5MC6|1|2|A|1526
5MC6|1|2|C|1527
5MC6|1|2|U|1528
Current chains
- Chain 2
- 18S ribosomal RNA
Nearby chains
- Chain A
- 40S ribosomal protein S3
- Chain B
- 40S ribosomal protein S5
- Chain F
- 40S ribosomal protein S16-A
- Chain H
- 40S ribosomal protein S18-A
- Chain I
- 40S ribosomal protein S19-A
- Chain J
- 40S ribosomal protein S20
- Chain K
- 40S ribosomal protein S25-A
- Chain M
- 40S ribosomal protein S29-A
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