IL_5MDV_171
3D structure
- PDB id
- 5MDV (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of ArfA and RF2 bound to the 70S ribosome (accommodated state)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.97 Å
Loop
- Sequence
- GAAG*CGGACC
- Length
- 10 nucleotides
- Bulged bases
- 5MDV|1|2|A|1257, 5MDV|1|2|A|1280
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5MDV_171 not in the Motif Atlas
- Homologous match to IL_5J7L_055
- Geometric discrepancy: 0.1177
- The information below is about IL_5J7L_055
- Detailed Annotation
- 180 degree turn
- Broad Annotation
- No text annotation
- Motif group
- IL_11344.2
- Basepair signature
- cWW-cSS-L-cWW
- Number of instances in this motif group
- 2
Unit IDs
5MDV|1|2|G|1255
5MDV|1|2|A|1256
5MDV|1|2|A|1257
5MDV|1|2|G|1258
*
5MDV|1|2|C|1277
5MDV|1|2|G|1278
5MDV|1|2|G|1279
5MDV|1|2|A|1280
5MDV|1|2|C|1281
5MDV|1|2|C|1282
Current chains
- Chain 2
- 16S ribosomal RNA
Nearby chains
- Chain h
- 30S ribosomal protein S3
- Chain n
- 30S ribosomal protein S9
- Chain o
- 30S ribosomal protein S10
- Chain s
- 30S ribosomal protein S14
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