IL_5MDY_053
3D structure
- PDB id
- 5MDY (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of ArfA and TtRF2 bound to the 70S ribosome (pre-accommodated state)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.35 Å
Loop
- Sequence
- UUA*UA
- Length
- 5 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5MDY_053 not in the Motif Atlas
- Geometric match to IL_4V83_236
- Geometric discrepancy: 0.3535
- The information below is about IL_4V83_236
- Detailed Annotation
- Single stack bend
- Broad Annotation
- No text annotation
- Motif group
- IL_15011.1
- Basepair signature
- cWW-L-cWW
- Number of instances in this motif group
- 48
Unit IDs
5MDY|1|1|U|1411
5MDY|1|1|U|1412
5MDY|1|1|A|1413
*
5MDY|1|1|U|1589
5MDY|1|1|A|1590
Current chains
- Chain 1
- 23S ribosomal RNA
Nearby chains
No other chains within 10ÅColoring options: