IL_5MDY_073

3D structure

PDB id

5MDY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of ArfA and TtRF2 bound to the 70S ribosome (pre-accommodated state)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.35 Å

Loop

Sequence

UGCAAAC*GGACGUAUA

Length

16 nucleotides

Bulged bases

5MDY|1|1|A|1801, 5MDY|1|1|C|1816, 5MDY|1|1|U|1820

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5MDY_073 not in the Motif Atlas

Homologous match to IL_5J7L_313

Geometric discrepancy: 0.0583

The information below is about IL_5J7L_313

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_17069.5

Basepair signature

cWW-tSH-tHH-cSS-tWW-tHH-tSS-cWW

Number of instances in this motif group

5

Unit IDs

5MDY|1|1|U|1798
5MDY|1|1|G|1799
5MDY|1|1|C|1800
5MDY|1|1|A|1801
5MDY|1|1|A|1802
5MDY|1|1|A|1803
5MDY|1|1|C|1804
*
5MDY|1|1|G|1813
5MDY|1|1|G|1814
5MDY|1|1|A|1815
5MDY|1|1|C|1816
5MDY|1|1|G|1817
5MDY|1|1|U|1818
5MDY|1|1|A|1819
5MDY|1|1|U|1820
5MDY|1|1|A|1821

Current chains

Chain 1

23S ribosomal RNA

Nearby chains

Chain 2

Small subunit ribosomal RNA; SSU rRNA

Chain B

50S ribosomal protein L2