IL_5MDY_105
3D structure
- PDB id
- 5MDY (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of ArfA and TtRF2 bound to the 70S ribosome (pre-accommodated state)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.35 Å
Loop
- Sequence
- CUGAG*CGAGAUGAG
- Length
- 14 nucleotides
- Bulged bases
- 5MDY|1|1|G|2780
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5MDY_105 not in the Motif Atlas
- Homologous match to IL_5J7L_345
- Geometric discrepancy: 0.0706
- The information below is about IL_5J7L_345
- Detailed Annotation
- tSH-tHS-tHW
- Broad Annotation
- tSH-tHS-tHW
- Motif group
- IL_04638.3
- Basepair signature
- cWW-tSH-tHW-tHS-cSH-cWW-L
- Number of instances in this motif group
- 5
Unit IDs
5MDY|1|1|C|2636
5MDY|1|1|U|2637
5MDY|1|1|G|2638
5MDY|1|1|A|2639
5MDY|1|1|G|2640
*
5MDY|1|1|C|2774
5MDY|1|1|G|2775
5MDY|1|1|A|2776
5MDY|1|1|G|2777
5MDY|1|1|A|2778
5MDY|1|1|U|2779
5MDY|1|1|G|2780
5MDY|1|1|A|2781
5MDY|1|1|G|2782
Current chains
- Chain 1
- 23S ribosomal RNA
Nearby chains
- Chain C
- 50S ribosomal protein L3
- Chain J
- 50S ribosomal protein L13
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