IL_5MDY_139
3D structure
- PDB id
- 5MDY (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of ArfA and TtRF2 bound to the 70S ribosome (pre-accommodated state)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.35 Å
Loop
- Sequence
- G(PSU)GCCAG*CGGUAAUAC
- Length
- 16 nucleotides
- Bulged bases
- 5MDY|1|2|A|532, 5MDY|1|2|U|534, 5MDY|1|2|A|535
- QA status
- Modified nucleotides: PSU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5MDY_139 not in the Motif Atlas
- Geometric match to IL_4V88_415
- Geometric discrepancy: 0.2352
- The information below is about IL_4V88_415
- Detailed Annotation
- Kink-turn related
- Broad Annotation
- No text annotation
- Motif group
- IL_54177.1
- Basepair signature
- cWW-cSW-tWH-L-R-L-R-tHS-cWW
- Number of instances in this motif group
- 5
Unit IDs
5MDY|1|2|G|515
5MDY|1|2|PSU|516
5MDY|1|2|G|517
5MDY|1|2|C|518
5MDY|1|2|C|519
5MDY|1|2|A|520
5MDY|1|2|G|521
*
5MDY|1|2|C|528
5MDY|1|2|G|529
5MDY|1|2|G|530
5MDY|1|2|U|531
5MDY|1|2|A|532
5MDY|1|2|A|533
5MDY|1|2|U|534
5MDY|1|2|A|535
5MDY|1|2|C|536
Current chains
- Chain 2
- 16S ribosomal RNA
Nearby chains
- Chain 6
- Alternative ribosome-rescue factor A
- Chain 7
- Peptide chain release factor 2
- Chain h
- 30S ribosomal protein S3
- Chain i
- 30S ribosomal protein S4
- Chain q
- 30S ribosomal protein S12
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