IL_5MDZ_074

3D structure

PDB id

5MDZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 70S ribosome (empty A site)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UGCAAAC*GGACGUAUA

Length

16 nucleotides

Bulged bases

5MDZ|1|1|A|1801, 5MDZ|1|1|C|1816, 5MDZ|1|1|U|1820

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5MDZ_074 not in the Motif Atlas

Homologous match to IL_5J7L_313

Geometric discrepancy: 0.049

The information below is about IL_5J7L_313

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_17069.5

Basepair signature

cWW-tSH-tHH-cSS-tWW-tHH-tSS-cWW

Number of instances in this motif group

5

Unit IDs

5MDZ|1|1|U|1798
5MDZ|1|1|G|1799
5MDZ|1|1|C|1800
5MDZ|1|1|A|1801
5MDZ|1|1|A|1802
5MDZ|1|1|A|1803
5MDZ|1|1|C|1804
*
5MDZ|1|1|G|1813
5MDZ|1|1|G|1814
5MDZ|1|1|A|1815
5MDZ|1|1|C|1816
5MDZ|1|1|G|1817
5MDZ|1|1|U|1818
5MDZ|1|1|A|1819
5MDZ|1|1|U|1820
5MDZ|1|1|A|1821

Current chains

Chain 1

23S ribosomal RNA

Nearby chains

Chain 2

Small subunit ribosomal RNA; SSU rRNA

Chain B

50S ribosomal protein L2