IL_5MDZ_150

3D structure

PDB id

5MDZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 70S ribosome (empty A site)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UGUAG*CGUAGAGA

Length

13 nucleotides

Bulged bases

5MDZ|1|2|A|702

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5MDZ_150 not in the Motif Atlas

Homologous match to IL_5J7L_035

Geometric discrepancy: 0.0911

The information below is about IL_5J7L_035

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_01488.3

Basepair signature

cWW-tSS-tSH-L-R-tHS-L-cWW

Number of instances in this motif group

10

Unit IDs

5MDZ|1|2|U|684
5MDZ|1|2|G|685
5MDZ|1|2|U|686
5MDZ|1|2|A|687
5MDZ|1|2|G|688
*
5MDZ|1|2|C|699
5MDZ|1|2|G|700
5MDZ|1|2|U|701
5MDZ|1|2|A|702
5MDZ|1|2|G|703
5MDZ|1|2|A|704
5MDZ|1|2|G|705
5MDZ|1|2|A|706

Current chains

Chain 2

16S ribosomal RNA

Nearby chains

Chain 1

Large subunit ribosomal RNA; LSU rRNA

Chain p

30S ribosomal protein S11