IL_5ME0_034

3D structure

PDB id

5ME0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 30S Pre-Initiation Complex 1 (30S IC-1) Stalled by GE81112

Experimental method

ELECTRON MICROSCOPY

Resolution

13.5 Å

Loop

Sequence

UGUAG*CGUAGAGA

Length

13 nucleotides

Bulged bases

5ME0|1|A|A|702

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5ME0_034 not in the Motif Atlas

Homologous match to IL_5J7L_035

Geometric discrepancy: 0.0593

The information below is about IL_5J7L_035

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_01488.3

Basepair signature

cWW-tSS-tSH-L-R-tHS-L-cWW

Number of instances in this motif group

10

Unit IDs

5ME0|1|A|U|684
5ME0|1|A|G|685
5ME0|1|A|U|686
5ME0|1|A|A|687
5ME0|1|A|G|688
*
5ME0|1|A|C|699
5ME0|1|A|G|700
5ME0|1|A|U|701
5ME0|1|A|A|702
5ME0|1|A|G|703
5ME0|1|A|A|704
5ME0|1|A|G|705
5ME0|1|A|A|706

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain K

30S ribosomal protein S11

Chain Y

Translation initiation factor IF-3