IL_5ME1_023

3D structure

PDB id

5ME1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 30S Pre-Initiation Complex 2 (30S IC-2) Stalled by GE81112

Experimental method

ELECTRON MICROSCOPY

Resolution

13.5 Å

Loop

Sequence

GAAGGG*CAUUGAC

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5ME1_023 not in the Motif Atlas

Homologous match to IL_5J7L_023

Geometric discrepancy: 0.0721

The information below is about IL_5J7L_023

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_70801.1

Basepair signature

cWW-cWW-L-R-tWW-L-R-L-cWW

Number of instances in this motif group

1

Unit IDs

5ME1|1|A|G|450
5ME1|1|A|A|451
5ME1|1|A|A|452
5ME1|1|A|G|453
5ME1|1|A|G|454
5ME1|1|A|G|455
*
5ME1|1|A|C|477
5ME1|1|A|A|478
5ME1|1|A|U|479
5ME1|1|A|U|480
5ME1|1|A|G|481
5ME1|1|A|A|482
5ME1|1|A|C|483

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain P

30S ribosomal protein S16