IL_5ME1_057

3D structure

PDB id

5ME1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 30S Pre-Initiation Complex 2 (30S IC-2) Stalled by GE81112

Experimental method

ELECTRON MICROSCOPY

Resolution

13.5 Å

Loop

Sequence

G(4OC)CC*G(UR3)AAC

Length

9 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: 4OC, UR3

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5ME1_057 not in the Motif Atlas

Geometric match to IL_4V88_464

Geometric discrepancy: 0.0843

The information below is about IL_4V88_464

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_65718.1

Basepair signature

cWW-cSH-cWS-cWW-cWW

Number of instances in this motif group

5

Unit IDs

5ME1|1|A|G|1401
5ME1|1|A|4OC|1402
5ME1|1|A|C|1403
5ME1|1|A|C|1404
*
5ME1|1|A|G|1497
5ME1|1|A|UR3|1498
5ME1|1|A|A|1499
5ME1|1|A|A|1500
5ME1|1|A|C|1501

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain X

Transfer RNA; tRNA

Chain Z

Translation initiation factor IF-3