IL_5ME1_068

3D structure

PDB id

5ME1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 30S Pre-Initiation Complex 2 (30S IC-2) Stalled by GE81112

Experimental method

ELECTRON MICROSCOPY

Resolution

13.5 Å

Loop

Sequence

(5MC)AC*GAAG

Length

7 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: 5MC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5ME1_068 not in the Motif Atlas

Homologous match to IL_5J7L_364

Geometric discrepancy: 0.0912

The information below is about IL_5J7L_364

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_90351.1

Basepair signature

cWW-L-R-L-cWW

Number of instances in this motif group

8

Unit IDs

5ME1|1|A|5MC|1407
5ME1|1|A|A|1408
5ME1|1|A|C|1409
*
5ME1|1|A|G|1491
5ME1|1|A|A|1492
5ME1|1|A|A|1493
5ME1|1|A|G|1494

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain L

30S ribosomal protein S12

Chain V

Translation initiation factor IF-1

Chain Z

Translation initiation factor IF-3