IL_5MEI_030

3D structure

PDB id

5MEI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of Agelastatin A bound to the 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

UGAAG*UGGAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5MEI_030 not in the Motif Atlas

Geometric match to IL_5TBW_030

Geometric discrepancy: 0.0635

The information below is about IL_5TBW_030

Detailed Annotation

Triple sheared

Broad Annotation

No text annotation

Motif group

IL_95716.2

Basepair signature

cWW-cWW-tHS-tHS-tSH-cWW

Number of instances in this motif group

18

Unit IDs

5MEI|1|1|U|834
5MEI|1|1|G|835
5MEI|1|1|A|836
5MEI|1|1|A|837
5MEI|1|1|G|838
*
5MEI|1|1|U|855
5MEI|1|1|G|856
5MEI|1|1|G|857
5MEI|1|1|A|858
5MEI|1|1|G|859

Current chains

Chain 1

25S ribosomal RNA

Nearby chains

Chain AQ

60S ribosomal protein L43-A

Chain j

60S ribosomal protein L2-A

Chain z

60S ribosomal protein L19-A