IL_5MEI_187

3D structure

PDB id

5MEI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of Agelastatin A bound to the 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

GCUAAC*GCGAAC

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5MEI_187 not in the Motif Atlas

Homologous match to IL_4V88_421

Geometric discrepancy: 0.096

The information below is about IL_4V88_421

Detailed Annotation

Triple sheared related

Broad Annotation

Triple sheared related

Motif group

IL_82488.1

Basepair signature

cWW-tSH-tSH-tHS-cWW-cWW

Number of instances in this motif group

7

Unit IDs

5MEI|1|6|G|703
5MEI|1|6|C|704
5MEI|1|6|U|705
5MEI|1|6|A|706
5MEI|1|6|A|707
5MEI|1|6|C|708
*
5MEI|1|6|G|730
5MEI|1|6|C|731
5MEI|1|6|G|732
5MEI|1|6|A|733
5MEI|1|6|A|734
5MEI|1|6|C|735

Current chains

Chain 6

18S ribosomal RNA

Nearby chains