IL_5MEI_188

3D structure

PDB id

5MEI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of Agelastatin A bound to the 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

CUUG*CUUG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5MEI_188 not in the Motif Atlas

Geometric match to IL_4EYA_003

Geometric discrepancy: 0.2306

The information below is about IL_4EYA_003

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_71194.1

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

29

Unit IDs

5MEI|1|6|C|709
5MEI|1|6|U|710
5MEI|1|6|U|711
5MEI|1|6|G|712
*
5MEI|1|6|C|726
5MEI|1|6|U|727
5MEI|1|6|U|728
5MEI|1|6|G|729

Current chains

Chain 6

18S ribosomal RNA

Nearby chains