IL_5MEI_231
3D structure
- PDB id
- 5MEI (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of Agelastatin A bound to the 80S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.5 Å
Loop
- Sequence
- CGAU*AGAG
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5MEI_231 not in the Motif Atlas
- Homologous match to IL_4V88_468
- Geometric discrepancy: 0.0747
- The information below is about IL_4V88_468
- Detailed Annotation
- Double sheared
- Broad Annotation
- Double sheared
- Motif group
- IL_09705.12
- Basepair signature
- cWW-tSH-tHS-cWW
- Number of instances in this motif group
- 35
Unit IDs
5MEI|1|6|C|1653
5MEI|1|6|G|1654
5MEI|1|6|A|1655
5MEI|1|6|U|1656
*
5MEI|1|6|A|1744
5MEI|1|6|G|1745
5MEI|1|6|A|1746
5MEI|1|6|G|1747
Current chains
- Chain 6
- 18S ribosomal RNA
Nearby chains
- Chain AR
- Large subunit ribosomal RNA; LSU rRNA
- Chain CX
- 60S ribosomal protein L23-A
- Chain DP
- 60S ribosomal protein L41-B
- Chain d3
- 40S ribosomal protein S23-A
Coloring options: