IL_5MEI_249
3D structure
- PDB id
- 5MEI (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of Agelastatin A bound to the 80S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.5 Å
Loop
- Sequence
- GUAUAAC*GCUAAUAC
- Length
- 15 nucleotides
- Bulged bases
- 5MEI|1|A|U|170
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5MEI_249 not in the Motif Atlas
- Geometric match to IL_4V88_394
- Geometric discrepancy: 0.1222
- The information below is about IL_4V88_394
- Detailed Annotation
- tWH-tWH-tHW-tHW
- Broad Annotation
- No text annotation
- Motif group
- IL_80604.3
- Basepair signature
- cWW-cWW-tWH-tWH-tHW-L-R-cWW
- Number of instances in this motif group
- 4
Unit IDs
5MEI|1|A|G|143
5MEI|1|A|U|144
5MEI|1|A|A|145
5MEI|1|A|U|146
5MEI|1|A|A|147
5MEI|1|A|A|148
5MEI|1|A|C|149
*
5MEI|1|A|G|165
5MEI|1|A|C|166
5MEI|1|A|U|167
5MEI|1|A|A|168
5MEI|1|A|A|169
5MEI|1|A|U|170
5MEI|1|A|A|171
5MEI|1|A|C|172
Current chains
- Chain A
- 18S ribosomal RNA
Nearby chains
- Chain 7
- 60S ribosomal protein L24-A
- Chain H
- 40S ribosomal protein S6-A
- Chain Z
- 40S ribosomal protein S24-A
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