IL_5MEI_250

3D structure

PDB id

5MEI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of Agelastatin A bound to the 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

UGU*AGA

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5MEI_250 not in the Motif Atlas

Geometric match to IL_6RA4_002

Geometric discrepancy: 0.1513

The information below is about IL_6RA4_002

Detailed Annotation

Isolated cWH basepair

Broad Annotation

No text annotation

Motif group

IL_10167.6

Basepair signature

cWW-cHW-cWW

Number of instances in this motif group

51

Unit IDs

5MEI|1|A|U|150
5MEI|1|A|G|151
5MEI|1|A|U|152
*
5MEI|1|A|A|162
5MEI|1|A|G|163
5MEI|1|A|A|164

Current chains

Chain A

18S ribosomal RNA

Nearby chains

Chain 7

60S ribosomal protein L24-A

Chain H

40S ribosomal protein S6-A

Chain Z

40S ribosomal protein S24-A