IL_5MEI_276

3D structure

PDB id

5MEI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of Agelastatin A bound to the 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

ACGUUU*AUCGU

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5MEI_276 not in the Motif Atlas

Geometric match to IL_7VYX_008

Geometric discrepancy: 0.3839

The information below is about IL_7VYX_008

Detailed Annotation

Partly complementary

Broad Annotation

Partly complementary

Motif group

IL_71154.3

Basepair signature

cWW-cWW-cWW-cWW-cWW

Number of instances in this motif group

17

Unit IDs

5MEI|1|A|A|817
5MEI|1|A|C|818
5MEI|1|A|G|819
5MEI|1|A|U|820
5MEI|1|A|U|821
5MEI|1|A|U|822
*
5MEI|1|A|A|850
5MEI|1|A|U|851
5MEI|1|A|C|852
5MEI|1|A|G|853
5MEI|1|A|U|854

Current chains

Chain A

18S ribosomal RNA

Nearby chains

Chain I

40S ribosomal protein S7-A

Chain z

60S ribosomal protein L19-A