IL_5MEI_288
3D structure
- PDB id
- 5MEI (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of Agelastatin A bound to the 80S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.5 Å
Loop
- Sequence
- GGUG*CCC
- Length
- 7 nucleotides
- Bulged bases
- 5MEI|1|A|U|1052
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5MEI_288 not in the Motif Atlas
- Geometric match to IL_3TD0_002
- Geometric discrepancy: 0.3008
- The information below is about IL_3TD0_002
- Detailed Annotation
- Isolated non-canonical cWW pair
- Broad Annotation
- Isolated non-canonical cWW pair
- Motif group
- IL_57744.1
- Basepair signature
- cWW-cWW-cWW
- Number of instances in this motif group
- 22
Unit IDs
5MEI|1|A|G|1050
5MEI|1|A|G|1051
5MEI|1|A|U|1052
5MEI|1|A|G|1053
*
5MEI|1|A|C|1066
5MEI|1|A|C|1067
5MEI|1|A|C|1068
Current chains
- Chain A
- 18S ribosomal RNA
Nearby chains
- Chain B
- 40S ribosomal protein S0-A
- Chain C
- 40S ribosomal protein S1-A
- Chain S
- 40S ribosomal protein S17-B
- Chain c
- 40S ribosomal protein S27-A
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