IL_5MEI_314
3D structure
- PDB id
- 5MEI (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of Agelastatin A bound to the 80S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.5 Å
Loop
- Sequence
- GCCC*GUAAC
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5MEI_314 not in the Motif Atlas
- Geometric match to IL_4V88_464
- Geometric discrepancy: 0.1313
- The information below is about IL_4V88_464
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_65718.1
- Basepair signature
- cWW-cSH-cWS-cWW-cWW
- Number of instances in this motif group
- 5
Unit IDs
5MEI|1|A|G|1638
5MEI|1|A|C|1639
5MEI|1|A|C|1640
5MEI|1|A|C|1641
*
5MEI|1|A|G|1760
5MEI|1|A|U|1761
5MEI|1|A|A|1762
5MEI|1|A|A|1763
5MEI|1|A|C|1764
Current chains
- Chain A
- 18S ribosomal RNA
Nearby chains
- Chain 1
- Large subunit ribosomal RNA; LSU rRNA
- Chain AO
- 60S ribosomal protein L41-B
- Chain i
- Suppressor protein STM1
Coloring options: