IL_5MEI_381

3D structure

PDB id

5MEI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of Agelastatin A bound to the 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

GUGGC*GAAUC

Length

10 nucleotides

Bulged bases

5MEI|1|AR|G|1236

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5MEI_381 not in the Motif Atlas

Geometric match to IL_4V9F_043

Geometric discrepancy: 0.2063

The information below is about IL_4V9F_043

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_30542.3

Basepair signature

cWW-L-R-L-cWW-L

Number of instances in this motif group

4

Unit IDs

5MEI|1|AR|G|1234
5MEI|1|AR|U|1235
5MEI|1|AR|G|1236
5MEI|1|AR|G|1237
5MEI|1|AR|C|1238
*
5MEI|1|AR|G|1250
5MEI|1|AR|A|1251
5MEI|1|AR|A|1252
5MEI|1|AR|U|1253
5MEI|1|AR|C|1254

Current chains

Chain AR

25S ribosomal RNA

Nearby chains

Chain p0

60S acidic ribosomal protein P0