IL_5MEI_403

3D structure

PDB id

5MEI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of Agelastatin A bound to the 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

AGUCGG*CUGU

Length

10 nucleotides

Bulged bases

5MEI|1|AR|G|2335

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5MEI_403 not in the Motif Atlas

Homologous match to IL_5TBW_077

Geometric discrepancy: 0.0948

The information below is about IL_5TBW_077

Detailed Annotation

Intercalated tWH

Broad Annotation

Intercalated tWH

Motif group

IL_06455.1

Basepair signature

cWW-L-R-L-cWW-L-L

Number of instances in this motif group

7

Unit IDs

5MEI|1|AR|A|1901
5MEI|1|AR|G|1902
5MEI|1|AR|U|1903
5MEI|1|AR|C|1904
5MEI|1|AR|G|1905
5MEI|1|AR|G|1906
*
5MEI|1|AR|C|2333
5MEI|1|AR|U|2334
5MEI|1|AR|G|2335
5MEI|1|AR|U|2336

Current chains

Chain AR

25S ribosomal RNA

Nearby chains

Chain CE

60S ribosomal protein L3

Chain CX

60S ribosomal protein L23-A