IL_5MEI_409

3D structure

PDB id

5MEI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of Agelastatin A bound to the 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

CGAUGG*UGUUGACG

Length

14 nucleotides

Bulged bases

5MEI|1|AR|U|2159, 5MEI|1|AR|U|2175, 5MEI|1|AR|C|2179

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5MEI_409 not in the Motif Atlas

Homologous match to IL_5TBW_083

Geometric discrepancy: 0.0584

The information below is about IL_5TBW_083

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_64509.1

Basepair signature

cWW-tWW-tWW-tSS-L-cWW

Number of instances in this motif group

2

Unit IDs

5MEI|1|AR|C|2156
5MEI|1|AR|G|2157
5MEI|1|AR|A|2158
5MEI|1|AR|U|2159
5MEI|1|AR|G|2160
5MEI|1|AR|G|2161
*
5MEI|1|AR|U|2173
5MEI|1|AR|G|2174
5MEI|1|AR|U|2175
5MEI|1|AR|U|2176
5MEI|1|AR|G|2177
5MEI|1|AR|A|2178
5MEI|1|AR|C|2179
5MEI|1|AR|G|2180

Current chains

Chain AR

25S ribosomal RNA

Nearby chains

Chain 6

Small subunit ribosomal RNA; SSU rRNA

Chain CD

60S ribosomal protein L2-A

Chain DR

60S ribosomal protein L43-A