IL_5MEI_413

3D structure

PDB id

5MEI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of Agelastatin A bound to the 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

GAAUG*CGC

Length

8 nucleotides

Bulged bases

5MEI|1|AR|U|2209

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5MEI_413 not in the Motif Atlas

Geometric match to IL_5TBW_087

Geometric discrepancy: 0.2185

The information below is about IL_5TBW_087

Detailed Annotation

Major groove platform with extra pair

Broad Annotation

Major groove platform

Motif group

IL_63450.5

Basepair signature

cWW-cHS-cWW-cWW-cWW

Number of instances in this motif group

7

Unit IDs

5MEI|1|AR|G|2206
5MEI|1|AR|A|2207
5MEI|1|AR|A|2208
5MEI|1|AR|U|2209
5MEI|1|AR|G|2210
*
5MEI|1|AR|C|2235
5MEI|1|AR|G|2236
5MEI|1|AR|C|2237

Current chains

Chain AR

25S ribosomal RNA

Nearby chains

Chain 6

Small subunit ribosomal RNA; SSU rRNA