IL_5MEI_414

3D structure

PDB id

5MEI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of Agelastatin A bound to the 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

UCAAAGU*AACCAAG

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5MEI_414 not in the Motif Atlas

Homologous match to IL_5TBW_088

Geometric discrepancy: 0.074

The information below is about IL_5TBW_088

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_36973.8

Basepair signature

cWW-tSH-L-R-L-R-L-R-cWW-cWW

Number of instances in this motif group

3

Unit IDs

5MEI|1|AR|U|2211
5MEI|1|AR|C|2212
5MEI|1|AR|A|2213
5MEI|1|AR|A|2214
5MEI|1|AR|A|2215
5MEI|1|AR|G|2216
5MEI|1|AR|U|2217
*
5MEI|1|AR|A|2228
5MEI|1|AR|A|2229
5MEI|1|AR|C|2230
5MEI|1|AR|C|2231
5MEI|1|AR|A|2232
5MEI|1|AR|A|2233
5MEI|1|AR|G|2234

Current chains

Chain AR

25S ribosomal RNA

Nearby chains

Chain DK

60S ribosomal protein L36-A

Chain DQ

60S ribosomal protein L42-A