IL_5MEI_446

3D structure

PDB id

5MEI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of Agelastatin A bound to the 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

CACAC*GCGUG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5MEI_446 not in the Motif Atlas

Homologous match to IL_5TBW_121

Geometric discrepancy: 0.1499

The information below is about IL_5TBW_121

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_05145.3

Basepair signature

cWW-cWW-cWW-cWW-cWW

Number of instances in this motif group

13

Unit IDs

5MEI|1|AR|C|3162
5MEI|1|AR|A|3163
5MEI|1|AR|C|3164
5MEI|1|AR|A|3165
5MEI|1|AR|C|3166
*
5MEI|1|AR|G|3284
5MEI|1|AR|C|3285
5MEI|1|AR|G|3286
5MEI|1|AR|U|3287
5MEI|1|AR|G|3288

Current chains

Chain AR

25S ribosomal RNA

Nearby chains