IL_5MEI_478

3D structure

PDB id

5MEI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of Agelastatin A bound to the 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

CCACAC*GCGUGG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5MEI_478 not in the Motif Atlas

Geometric match to IL_5TBW_476

Geometric discrepancy: 0.3169

The information below is about IL_5TBW_476

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_31007.1

Basepair signature

cWW-L-R-L-R-L-R-L-R-cWW

Number of instances in this motif group

5

Unit IDs

5MEI|1|1|C|3161
5MEI|1|1|C|3162
5MEI|1|1|A|3163
5MEI|1|1|C|3164
5MEI|1|1|A|3165
5MEI|1|1|C|3166
*
5MEI|1|1|G|3284
5MEI|1|1|C|3285
5MEI|1|1|G|3286
5MEI|1|1|U|3287
5MEI|1|1|G|3288
5MEI|1|1|G|3289

Current chains

Chain 1

25S ribosomal RNA

Nearby chains