IL_5MEI_479
3D structure
- PDB id
- 5MEI (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of Agelastatin A bound to the 80S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.5 Å
Loop
- Sequence
- GUAGCC*GUUGUUAC
- Length
- 14 nucleotides
- Bulged bases
- 5MEI|1|1|U|3354, 5MEI|1|1|U|3355
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5MEI_479 not in the Motif Atlas
- Geometric match to IL_5TBW_476
- Geometric discrepancy: 0.0703
- The information below is about IL_5TBW_476
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_31007.1
- Basepair signature
- cWW-L-R-L-R-L-R-L-R-cWW
- Number of instances in this motif group
- 5
Unit IDs
5MEI|1|1|G|3345
5MEI|1|1|U|3346
5MEI|1|1|A|3347
5MEI|1|1|G|3348
5MEI|1|1|C|3349
5MEI|1|1|C|3350
*
5MEI|1|1|G|3353
5MEI|1|1|U|3354
5MEI|1|1|U|3355
5MEI|1|1|G|3356
5MEI|1|1|U|3357
5MEI|1|1|U|3358
5MEI|1|1|A|3359
5MEI|1|1|C|3360
Current chains
- Chain 1
- 25S ribosomal RNA
Nearby chains
- Chain 5
- 60S ribosomal protein L22-A
- Chain J
- 40S ribosomal protein S8-A
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