IL_5MEI_489

3D structure

PDB id

5MEI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of Agelastatin A bound to the 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

UAG*CAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5MEI_489 not in the Motif Atlas

Homologous match to IL_8P9A_464

Geometric discrepancy: 0.1742

The information below is about IL_8P9A_464

Detailed Annotation

Isolated tWW contact

Broad Annotation

Isolated tWW contact

Motif group

IL_55553.1

Basepair signature

cWW-L-R-cWW

Number of instances in this motif group

4

Unit IDs

5MEI|1|6|U|1688
5MEI|1|6|A|1689
5MEI|1|6|G|1690
*
5MEI|1|6|C|1711
5MEI|1|6|A|1712
5MEI|1|6|G|1713

Current chains

Chain 6

18S ribosomal RNA

Nearby chains

Chain CY

60S ribosomal protein L24-A