IL_5MEI_519

3D structure

PDB id

5MEI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of Agelastatin A bound to the 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

GGU*GAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5MEI_519 not in the Motif Atlas

Geometric match to IL_7QUA_003

Geometric discrepancy: 0.1606

The information below is about IL_7QUA_003

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_87907.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

179

Unit IDs

5MEI|1|A|G|871
5MEI|1|A|G|872
5MEI|1|A|U|873
*
5MEI|1|A|G|954
5MEI|1|A|A|955
5MEI|1|A|C|956

Current chains

Chain A

18S ribosomal RNA

Nearby chains

Chain C

40S ribosomal protein S1-A

Chain O

40S ribosomal protein S13

Chain c

40S ribosomal protein S27-A