IL_5MGP_095

3D structure

PDB id

5MGP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural basis for ArfA-RF2 mediated translation termination on stop-codon lacking mRNAs

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CUGAG*CGAGAUGAG

Length

14 nucleotides

Bulged bases

5MGP|1|A|G|2780

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5MGP_095 not in the Motif Atlas

Homologous match to IL_5J7L_345

Geometric discrepancy: 0.1065

The information below is about IL_5J7L_345

Detailed Annotation

tSH-tHS-tHW

Broad Annotation

tSH-tHS-tHW

Motif group

IL_04638.3

Basepair signature

cWW-tSH-tHW-tHS-cSH-cWW-L

Number of instances in this motif group

5

Unit IDs

5MGP|1|A|C|2636
5MGP|1|A|U|2637
5MGP|1|A|G|2638
5MGP|1|A|A|2639
5MGP|1|A|G|2640
*
5MGP|1|A|C|2774
5MGP|1|A|G|2775
5MGP|1|A|A|2776
5MGP|1|A|G|2777
5MGP|1|A|A|2778
5MGP|1|A|U|2779
5MGP|1|A|G|2780
5MGP|1|A|A|2781
5MGP|1|A|G|2782

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain D

50S ribosomal protein L3

Chain J

50S ribosomal protein L13